PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100110840011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 132aa MW: 14627.8 Da PI: 9.0511

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100110840011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.3	2.6e-38	47	132	1	86
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i+ Ote100110840011\|100110840011 47 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPETQRADAANSLVYEANVRLRDPVYGCMGAIS 127 7****************************************************************************** PP DUF260 82 klqqq 86 +lqqq Ote100110840011\|100110840011 128 ALQQQ 132 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.396	46	132	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.9E-39	47	132	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MSTERERFEE IGKKIKREVD AAAVPHQQMG GRRHVLGAAG TLNTITPCAA CKLLRRRCAQ 60 ECPFSPYFSP HEPHKFASVH KVFGASNVSK MLMEVPETQR ADAANSLVYE ANVRLRDPVY 120 GCMGAISALQ QQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-38	47	132	11	96	LOB family transfactor Ramosa2.1
5ly0_B	1e-38	47	132	11	96	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022746093.1	2e-81	LOB domain-containing protein 15-like
Refseq	XP_022764403.1	2e-81	LOB domain-containing protein 15-like
Swissprot	Q8L5T5	9e-78	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A1R3KW59	9e-80	A0A1R3KW59_9ROSI; Uncharacterized protein
STRING	XP_002520837.1	3e-80	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]