PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100111190071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 241aa    MW: 27363.9 Da    PI: 5.2244
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100111190071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.33.8e-05109130627
                                   HHHHHHHHHHHHHHHHHHHCTS CS
                           HLH   6 nerErrRRdriNsafeeLrell 27 
                                    ++ErrRR+r+N++++ Lr+++
  Ote100111190071|100111190071 109 LMAERRRRKRLNDRLSMLRSIM 130
                                   589*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.083103153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-10105162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-7108160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-5109152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MELTHHHTTN PSLLDIISPA EISNPCPFGE FQPFLEALTS PELASFYDKD DLQQMAIQQD  60
YATHLEIGES LFLDSCFDGS FKVESTQIDN VGQKKSKSKK PEGQPSKNLM AERRRRKRLN  120
DRLSMLRSIM DRTSILGDTI DYMRELLDKI DKLRDDESTA TQSFFKNHEM QLRNPPKFEV  180
ERRSEDTRIE LCCAAKPGLL LSTLSTLDAL GLDAVEQRSV LSSEDVKQAL FRNAGYGGRC  240
L
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099455.15e-86transcription factor bHLH93
SwissprotQ9LSL12e-54BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0H3YB322e-95A0A0H3YB32_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.H00297.1.p4e-71(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]