PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100111190081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 210aa    MW: 23865.7 Da    PI: 5.4238
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100111190081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH278.2e-09101126630
                                   HHHHHHHHHHHHHHHHHHHCTSCC.C CS
                           HLH   6 nerErrRRdriNsafeeLrellPk.a 30 
                                    ++ErrRR+r+N++++ Lr+++Pk  
  Ote100111190081|100111190081 101 LMAERRRRKRLNDRLSMLRSIVPKiX 126
                                   589********************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-787126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.0195157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-7102126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-5102126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
TNPSLLDIIS PAEISNPCPF GEFQPFLEAL TSPELASFYD KDDLQQMAIQ QDYATHLEIG  60
ESLFLDSCFD GSFKVESTQI DNVGQKKSKS KKPEGQPSKN LMAERRRRKR LNDRLSMLRS  120
IVPKIXXXXX XXXXXSIIKL LDKIDKLRDD ESTATQSFFK NHEMQLRNPP KFEVERRSED  180
TRIELCCAAK PGLLLSTLST LDALGLDVQQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099455.12e-63transcription factor bHLH93
SwissprotQ9LSL12e-34BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0H3YB328e-77A0A0H3YB32_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.H00297.1.p1e-48(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]