PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100116070101
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 391aa    MW: 43950.9 Da    PI: 5.8738
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100116070101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS61.91.3e-1946113168
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppse 68 
                                   l++lLl+cA++v+sg+ e+a+  L+ +s+lasp+gd+mqR+aayfteALa r+++ +++l kal++++
  Ote100116070101|100116070101  46 LIHLLLACANHVASGSIENANIGLEYISHLASPNGDTMQRIAAYFTEALADRMLKGWPGLHKALNSTK 113
                                   689************************************************************98875 PP
2GRAS204.94.6e-6311433398274
                          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                                    N aIlea+ege+ vHiiD+   +++QW++L+q+L++Rpegpp+lRiTg+++    +ke l ++++rL++ Ae+l++pf+f
  Ote100116070101|100116070101 114 INFAILEAMEGEKVVHIIDLHCFEPAQWISLIQELSTRPEGPPHLRITGIHE----QKEVLDQMAHRLNEEAEKLDIPFQF 190
                                   589*************************************************....9************************ PP

                          GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrll............................................. 214
                                   n+ v++rle+l++e Lrvk+gEa+a+++vlqlh+ll                                             
  Ote100116070101|100116070101 191 NP-VVSRLENLDVECLRVKTGEAVAISSVLQLHSLLafddetlqknspslskrvlhinphtfgdflekdamstctaspesa 270
                                   **.7***************************************************************************** PP

                          GRAS 215 ...desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                                       ++++++s+++++L+++++lsPk++vv+eqe++hn++s+++r++eal++y+alfd+le  
  Ote100116070101|100116070101 271 lssPRPTPISSNISSFLSALRGLSPKLLVVTEQESNHNRTSLMDRIVEALNFYAALFDCLEXX 333
                                   *998888888899***********************************************976 PP
3GRAS42.21.2e-13345386333374
                          GRAS 333 aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                    ++ a++ll+ ++ dgy+v++e+g+++++W+d+pL+svSaWr
  Ote100116070101|100116070101 345 REDAARRLLQSYNYDGYKVKDENGCFIICWQDQPLFSVSAWR 386
                                   67789************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.28920391IPR005202Transcription factor GRAS
PfamPF035144.5E-1746113IPR005202Transcription factor GRAS
PfamPF035141.6E-60114333IPR005202Transcription factor GRAS
PfamPF035144.3E-11345386IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MVPEEGSSSV SSSPLQMFSM MSLSPGLGFP YPWLREMKSE ERGLHLIHLL LACANHVASG  60
SIENANIGLE YISHLASPNG DTMQRIAAYF TEALADRMLK GWPGLHKALN STKINFAILE  120
AMEGEKVVHI IDLHCFEPAQ WISLIQELST RPEGPPHLRI TGIHEQKEVL DQMAHRLNEE  180
AEKLDIPFQF NPVVSRLENL DVECLRVKTG EAVAISSVLQ LHSLLAFDDE TLQKNSPSLS  240
KRVLHINPHT FGDFLEKDAM STCTASPESA LSSPRPTPIS SNISSFLSAL RGLSPKLLVV  300
TEQESNHNRT SLMDRIVEAL NFYAALFDCL EXXXXXSIYR APKDREDAAR RLLQSYNYDG  360
YKVKDENGCF IICWQDQPLF SVSAWRFRRY S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-40303882380Protein SCARECROW
5b3h_D2e-40303882380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881941.10.0scarecrow-like protein 3
RefseqXP_015881942.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-147SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2R6RA360.0A0A2R6RA36_ACTCH; Scarecrow-like protein
STRINGVIT_13s0019g01220.t010.0(Vitis vinifera)
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]