PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100118440161

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C2H2

Protein Properties

Length: 500aa MW: 56243.2 Da PI: 4.865

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100118440161	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00065	174	188	5	19
TTTEEESSHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrH 19 +C++sF+++++L++H Ote100118440161\|100118440161 174 HCNMSFKSPEDLEKH 188 7************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF49599	9.15E-5	213	314	IPR008974	TRAF-like
Pfam	PF02176	3.4E-12	216	274	IPR001293	Zinc finger, TRAF-type
PROSITE profile	PS50145	12.671	216	267	IPR001293	Zinc finger, TRAF-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MDPPAEGIEL KPKKLGEEKD GGPVFQCDFC DADIVDKVAQ SFLPGLASAC IDNTMGGLFK 60 TPANVAVEVR KEMVEYLIQR SENFVAESVV LDGGADVQVS ADPYDVISDF IDDFVHSKRN 120 IFSRVSGWLL SEKREDWIDD FVQEMEVNGF WLLNRRLAIA QTLLKNLDFK NAYHCNMSFK 180 SPEDLEKHKW NCDFRTMSCM NEGCDSSCSA VQMDQHDSVC PFKMLPCEQH CSDIIMRREM 240 DRHCITTCPM KLVKCPFHSV GCQSTVPQRT AGQHRSESLS SHLLCVLQVI HKEALSEDLK 300 ERVQELEMLA SPGRLVSARD ARSLTYVVKD LEAKLEPLKV KTDTQRNEEA KNLVDGKEKT 360 HTEAENKSLV DKNEEKTGMP VKQVRFGESS ATPNSHSEGS NGHGKGEQME SSISEREDSS 420 HKMRVLMESS TDTSANEEEV VAINSKDSHS QREEGVSSPP KLDEQMERSF KEEHHAPVIQ 480 QEKLTESITE EGKFAEQTTK

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MDPPAEGIEL KPKKLGEEKD GGPVFQCDFC DADIVDKVAQ SFLPGLASAC IDNTMGGLFK  60
TPANVAVEVR KEMVEYLIQR SENFVAESVV LDGGADVQVS ADPYDVISDF IDDFVHSKRN  120
IFSRVSGWLL SEKREDWIDD FVQEMEVNGF WLLNRRLAIA QTLLKNLDFK NAYHCNMSFK  180
SPEDLEKHKW NCDFRTMSCM NEGCDSSCSA VQMDQHDSVC PFKMLPCEQH CSDIIMRREM  240
DRHCITTCPM KLVKCPFHSV GCQSTVPQRT AGQHRSESLS SHLLCVLQVI HKEALSEDLK  300
ERVQELEMLA SPGRLVSARD ARSLTYVVKD LEAKLEPLKV KTDTQRNEEA KNLVDGKEKT  360
HTEAENKSLV DKNEEKTGMP VKQVRFGESS ATPNSHSEGS NGHGKGEQME SSISEREDSS  420
HKMRVLMESS TDTSANEEEV VAINSKDSHS QREEGVSSPP KLDEQMERSF KEEHHAPVIQ  480
QEKLTESITE EGKFAEQTTK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078790.1	0.0	uncharacterized protein LOC105162468 isoform X2
TrEMBL	A0A4D8XXK5	0.0	A0A4D8XXK5_SALSN; Homogentisate solanesyltransferase
STRING	Migut.C01187.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4442	3	3