PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100118750041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 175aa MW: 19473.2 Da PI: 6.97

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100118750041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.9	1.2e-41	35	134	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaC++lrr+Ca+ Cvlapyfp ++p kfa+vh++FGasn++kllk+lpe +r d ++s+vyeA+ar+rdP+yG++gvi Ote100118750041\|100118750041 35 PCAACRILRRRCAETCVLAPYFPPTDPLKFAAVHRVFGASNIVKLLKKLPEAQRADGVRSMVYEANARLRDPIYGCTGVIC 115 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lq+++++l++ela+++++ Ote100118750041\|100118750041 116 HLQKNIDELQVELARTQAQ 134 ************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.105	34	135	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-41	35	132	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MDXXXXXXXX XGVAAAECCP SVVSPPRSLS VNMSPCAACR ILRRRCAETC VLAPYFPPTD 60 PLKFAAVHRV FGASNIVKLL KKLPEAQRAD GVRSMVYEAN ARLRDPIYGC TGVICHLQKN 120 IDELQVELAR TQAQFLNMQC QNANLLDQFY MQMATPDVEN APLHHENHTT FVDEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-39	34	140	10	116	LOB family transfactor Ramosa2.1
5ly0_B	4e-39	34	140	10	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077047.1	1e-64	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	8e-58	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A4D8ZPQ8	4e-66	A0A4D8ZPQ8_SALSN; Uncharacterized protein
STRING	XP_009610820.1	4e-63	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669