PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100119040041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

BBR-BPC

Protein Properties

Length: 141aa MW: 16270.9 Da PI: 7.295

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100119040041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	50.2	1.1e-15	1	102	1	96
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd..........maflqrdkal 67 mddd+ rn+gyyep lk lglqlmss++erd+k+ re+ + + + ++a+++rd m++ rd+++ Ote100119040041\|100119040041 1 MDDDSL--RNWGYYEPP--LK-GLGLQLMSSLTERDTKPflsgRENPV-MVSANGAFHHRDcvvteppvthMDY-VRDSWI 74 888866..9******..77.9**************9777777.99*******************.9* PP GAGA_bind 68 aernkalverdnkllalllvenslasalp 96 ++r+k l+ + + +l+e s++ ++p Ote100119040041\|100119040041 75 NHREKFLHMFPGNPYNSVLAESSAS-HHP 102 88877655444444444444333.222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	6.5E-22	1	113	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	5.3E-7	1	138	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MDDDSLRNWG YYEPPLKGLG LQLMSSLTER DTKPFLSGRE NPVMVSANGA FHHRDCVVTE 60 PPVTHMDYVR DSWINHREKF LHMFPGNPYN SVLAESSASH HPMQMVQQHQ PEPXXXXXXG 120 QPWKSRLPKR KAGLPRNEEL L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:15722463}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070518.1	5e-64	protein BASIC PENTACYSTEINE1-like
Swissprot	Q9SKD0	7e-21	BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBL	A0A2G9HBJ5	6e-64	A0A2G9HBJ5_9LAMI; Uncharacterized protein
STRING	XP_009762917.1	2e-50	(Nicotiana sylvestris)
STRING	XP_009608500.1	2e-50	(Nicotiana tomentosiformis)