PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100119640021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HSF

Protein Properties

Length: 248aa MW: 28636.6 Da PI: 9.852

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100119640021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.4	1.5e-35	22	114	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 Fl+k++e+++d+++++++sw e+ n+f+v+ + ef++++Lp+yFkh+nf+SFvRQLn+YgF+kv ++ weF+ Ote100119640021\|100119640021 22 FLSKTFELVNDSATDHIVSWGEDRNTFIVWRPPEFSRHLLPNYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFA 93 9***************************************************************99......... PP ESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkkse 103 ++ F+kg+k+ll++i+r+k++ Ote100119640021\|100119640021 94 NEFFRKGEKHLLCEIHRRKTA 114 ****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	8.8E-38	14	106	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	6.0E-57	18	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.5E-33	19	111	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	6.5E-19	22	45	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.0E-31	22	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.5E-19	60	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	61	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.5E-19	73	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MVDKSGTILL SLDSQKSVPA PFLSKTFELV NDSATDHIVS WGEDRNTFIV WRPPEFSRHL 60 LPNYFKHNNF SSFVRQLNTY GFRKVVPDRW EFANEFFRKG EKHLLCEIHR RKTAQPQIAI 120 GGHHHYSPLR NNCCGDSWSA LSEDNEILRR NNNLLISELS HMRKLYNDII YFVQNHVKPV 180 APANFHSSSP PQPADMAAAE ETYRTKLFGV PLPSRKRLHS EYNSSTAIKK SRLVIQKDDL 240 GLNLMSMK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	6e-21	17	114	16	123	Heat shock factor protein 1
5d5u_B	7e-21	17	113	25	131	Heat shock factor protein 1
5d5v_B	7e-21	17	113	25	131	Heat shock factor protein 1
5d5v_D	7e-21	17	113	25	131	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452467.1	1e-109	PREDICTED: heat stress transcription factor B-4-like isoform X1
Swissprot	Q9C635	3e-91	HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBL	A0A4D9BD77	1e-116	A0A4D9BD77_SALSN; Heat shock transcription factor, other eukaryote
STRING	Gorai.010G020700.1	1e-109	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2721	24	50