PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100120300101

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Protein Properties

Length: 160aa MW: 18008.1 Da PI: 4.8585

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100120300101	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.7	1.1e-18	28	117	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 ffk+ + l s +++p +f++++gg ++t tl+ +sg sW+v +++ ++ ++++GW eFv++n ++++D+++ Ote100120300101\|100120300101 28 FFKIYM--PDLCSEKMIIPPDFIDKFGGH--IPRTCTLKVPSGLSWQVDT--TRTNDSWFFQNGWPEFVEDNSIQVRDVLT 102 666663..34555669********888..6779***********..99999999***************** PP EEE-SSSEE..EEEEE- CS B3 82 Fkldgrsefelvvkvfr 98 F l+g+s+f +vk f+ Ote100120300101\|100120300101 103 FCLVGKSTF--TVKTFS 117 **98988..998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.75E-25	25	121	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.6E-23	25	121	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.33E-16	26	117	No hit	No description
PROSITE profile	PS50863	12.633	26	119	IPR003340	B3 DNA binding domain
SMART	SM01019	2.3E-14	28	119	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.7E-16	28	117	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MADVDGRARE RSNVSNEKVA FSDLLPEFFK IYMPDLCSEK MIIPPDFIDK FGGHIPRTCT 60 LKVPSGLSWQ VDTTRTNDSW FFQNGWPEFV EDNSIQVRDV LTFCLVGKST FTVKTFSPNG 120 CMKGGGVENT SKSNESCESE EDSEINGTSG RRQRRMDSRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012844349.1	1e-33	PREDICTED: B3 domain-containing protein At1g16640-like
TrEMBL	A0A2G9GXA9	1e-39	A0A2G9GXA9_9LAMI; Uncharacterized protein
STRING	Migut.M00219.1.p	6e-33	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12633	13	20