PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100120480131

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

G2-like

Protein Properties

Length: 370aa MW: 40190.4 Da PI: 9.4611

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100120480131	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.4	6.7e-28	103	156	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +++WtpeLH++Fv+aveqL G +kA+P++ilelm++++Lt+++v+SHLQkYR++ Ote100120480131\|100120480131 103 GKVDWTPELHRQFVQAVEQL-GVDKAVPSKILELMGIDCLTRHNVASHLQKYRSH 156 5899**************.******************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.328	99	158	IPR017930	Myb domain
SuperFamily	SSF46689	2.6E-19	100	159	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.1E-27	100	159	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.6E-26	102	156	IPR006447	Myb domain, plants
Pfam	PF00249	2.3E-8	105	154	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MDPRISAEIS SSAGEESEMS TEATGSVQVD KVREGNISIK EDKTPAASAS ASASNHGSGS 60 SIIQGEEPVS TREDLVADEY PRKVDKGRKS SAQINKVSGK KKGKVDWTPE LHRQFVQAVE 120 QLGVDKAVPS KILELMGIDC LTRHNVASHL QKYRSHRKHM LARESEVATW SRKRQLYRST 180 GSTRKNDANS WVVPTTGFPP VTSVSRSRPI HVWGHPSPNQ SLVYMWPSHL ASSPSPPPWA 240 AGHPPPRPLP GDPSFWNYHH QDVPAQGMVC YPSHYPQPTF ASPPVPGLPP SSMYRAAPSI 300 GVPVNVPGQK MAQPVQDSHL QSTESIDAVI GDVLSKPWLP LPLGLKPPSV DSVVVELQRQ 360 GISKIPPTCA

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MDPRISAEIS SSAGEESEMS TEATGSVQVD KVREGNISIK EDKTPAASAS ASASNHGSGS  60
SIIQGEEPVS TREDLVADEY PRKVDKGRKS SAQINKVSGK KKGKVDWTPE LHRQFVQAVE  120
QLGVDKAVPS KILELMGIDC LTRHNVASHL QKYRSHRKHM LARESEVATW SRKRQLYRST  180
GSTRKNDANS WVVPTTGFPP VTSVSRSRPI HVWGHPSPNQ SLVYMWPSHL ASSPSPPPWA  240
AGHPPPRPLP GDPSFWNYHH QDVPAQGMVC YPSHYPQPTF ASPPVPGLPP SSMYRAAPSI  300
GVPVNVPGQK MAQPVQDSHL QSTESIDAVI GDVLSKPWLP LPLGLKPPSV DSVVVELQRQ  360
GISKIPPTCA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	8e-17	98	154	1	57	ARR10-B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269\|PubMed:11828027, ECO:0000269\|PubMed:12220263, ECO:0000269\|PubMed:17533111, ECO:0000269\|PubMed:18643989, ECO:0000269\|PubMed:19376934, ECO:0000269\|PubMed:19383092, ECO:0000269\|PubMed:19726569, ECO:0000269\|PubMed:23459204}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. Repressed by BZR2. {ECO:0000269\|PubMed:12220263, ECO:0000269\|PubMed:21214652}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012847450.1	1e-151	PREDICTED: probable transcription factor GLK1 isoform X3
Swissprot	Q9SIV3	5e-70	GLK1_ARATH; Transcription activator GLK1
TrEMBL	A0A4D8XVC8	0.0	A0A4D8XVC8_SALSN; Uncharacterized protein
STRING	Migut.M00145.1.p	1e-151	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2532	23	56

Publications ? help Back to Top
Leister D,Kleine T Definition of a core module for the nuclear retrograde response to altered organellar gene expression identifies GLK overexpressors as gun mutants. Physiol Plant, 2016. 157(3): p. 297-309 [PMID:26876646] Nagatoshi Y, et al. GOLDEN 2-LIKE transcription factors for chloroplast development affect ozone tolerance through the regulation of stomatal movement. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(15): p. 4218-23 [PMID:27035938] Tokumaru M, et al. Ubiquitin-Proteasome Dependent Regulation of the GOLDEN2-LIKE 1 Transcription Factor in Response to Plastid Signals. Plant Physiol., 2017. 173(1): p. 524-535 [PMID:27821720] Ni F, et al. Turnip Yellow Mosaic Virus P69 Interacts with and Suppresses GLK Transcription Factors to Cause Pale-Green Symptoms in Arabidopsis. Mol Plant, 2017. 10(5): p. 764-766 [PMID:27964999] Wang H,Seo JK,Gao S,Cui X,Jin H Silencing of AtRAP, a target gene of a bacteria-induced small RNA, triggers antibacterial defense responses through activation of LSU2 and down-regulation of GLK1. New Phytol., 2017. 215(3): p. 1144-1155 [PMID:28656601]