PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100120830011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 245aa MW: 26525.2 Da PI: 10.2677

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100120830011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.2	9.1e-14	89	133	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g W++I+r k+Rt+ q+ s+ qky Ote100120830011\|100120830011 89 PWTEEEHKLFLIGLQKVGKGGWRRISRNYVKTRTPTQVASHAQKY 133 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.046	82	138	IPR017930	Myb domain
SuperFamily	SSF46689	7.48E-17	84	139	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.1E-16	85	136	IPR006447	Myb domain, plants
SMART	SM00717	1.6E-8	86	136	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-10	88	133	IPR009057	Homeodomain-like
CDD	cd00167	1.77E-8	89	134	No hit	No description
Pfam	PF00249	5.8E-11	89	133	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MPLYAESPAV GLGGSEIMLF GVRVNVDPMR KSVSMNNLSE YDPVSNTGNL SEKKAAPAKE 60 GAVPPGYASA DDAAPPPSSG GAERKRGTPW TEEEHKLFLI GLQKVGKGGW RRISRNYVKT 120 RTPTQVASHA QKYFLRRSNL NRRRRASVFD ITTDSVAAMA MEEARKCREI SPMQGENPLK 180 NGQDFLVDRS SVLIVNRAPV VSMPPSSAMA DLKLNQQVPP EPSALSLRLS LSSSFINGDG 240 TITVA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012853030.1	2e-78	PREDICTED: transcription factor MYB1R1-like
Swissprot	Q2V9B0	8e-57	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A4D8YFX1	3e-92	A0A4D8YFX1_SALSN; Uncharacterized protein
STRING	Migut.D01891.1.p	6e-78	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2574	23	51

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]