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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Ote100121130071 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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| Family | HB-other | ||||||||
| Protein Properties | Length: 129aa MW: 15508.7 Da PI: 9.7973 | ||||||||
| Description | HB-other family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 43.3 | 6.3e-14 | 3 | 53 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+f++ q+++Le +F++ ++++e+++ LA+++gL+ +qV+ WF rR +e+
Ote100121130071|100121130071 3 RFQQFQIDALEVAFQERGHLTRERKAALADQTGLDVEQVTSWFNRRRKRER 53
699*********************************************998 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00389 | 4.3E-7 | 1 | 59 | IPR001356 | Homeobox domain |
| PROSITE profile | PS50071 | 13.896 | 1 | 55 | IPR001356 | Homeobox domain |
| SuperFamily | SSF46689 | 6.84E-12 | 3 | 61 | IPR009057 | Homeodomain-like |
| CDD | cd00086 | 3.19E-9 | 3 | 53 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 3.6E-13 | 3 | 53 | IPR009057 | Homeodomain-like |
| Pfam | PF00046 | 3.0E-11 | 3 | 53 | IPR001356 | Homeobox domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 129 aa Download sequence Send to blast |
MNRFQQFQID ALEVAFQERG HLTRERKAAL ADQTGLDVEQ VTSWFNRRRK RERDGERRLM 60 SERRKSELEQ ALXXXXXXXX XXXXXXXXXX XXXXXLNDEI QKLRQQLRSF VGYDSDISDP 120 IRRFVNGYE |
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA15650 | 4 | 7 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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