PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100122700041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 119aa MW: 13145.6 Da PI: 4.9271

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100122700041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	31.3	4.2e-10	91	111	3	23
-SS-EEEEEEE--TT-SS-EE CS WRKY 3 DgynWrKYGqKevkgsefprs 23 D ++WrKYGqK++kgs++p s Ote100122700041\|100122700041 91 DSWSWRKYGQKPIKGSPYPSS 111 99****************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-9	80	111	IPR003657	WRKY domain
SuperFamily	SSF118290	5.1E-8	84	110	IPR003657	WRKY domain
PROSITE profile	PS50811	11.715	84	111	IPR003657	WRKY domain
Pfam	PF03106	5.2E-6	91	111	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MEDRSDHDRD EDSTVTPPAE NTADSPISGD EAAEETYAPS PKKRRGGXXX XXXXXXXNKK 60 VVTVPIRDGD GXXXXXXXXX RSKAEVYPPP DSWSWRKYGQ KPIKGSPYPS SVAAGDGRE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012837543.1	4e-30	PREDICTED: probable WRKY transcription factor 69
Swissprot	Q93WV5	8e-15	WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBL	A0A2G9HZX0	2e-30	A0A2G9HZX0_9LAMI; Uncharacterized protein
STRING	Migut.M00241.1.p	2e-29	(Erythranthe guttata)

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]