PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100124380051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ERF
Protein Properties Length: 225aa    MW: 25713.2 Da    PI: 8.9124
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100124380051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-2079128255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr+++ +g+WvAeIr p++   r r +lg+f+taeeAa a++ a+ kl+g
  Ote100124380051|100124380051  79 LYRGVRQRH-WGKWVAEIRLPKN---RSRLWLGTFDTAEEAAVAYDTAAYKLRG 128
                                   59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.13E-3378138No hitNo description
SuperFamilySSF541714.58E-2379137IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.8E-3279137IPR001471AP2/ERF domain
SMARTSM003805.5E-3579142IPR001471AP2/ERF domain
PROSITE profilePS5103223.15679136IPR001471AP2/ERF domain
PRINTSPR003673.0E-118091IPR001471AP2/ERF domain
PfamPF008477.6E-1380128IPR001471AP2/ERF domain
PRINTSPR003673.0E-11102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEIMASAFHT HNSANNQIPH QEELTQPFQP SMKIXXXXXX XQAQFHHNQQ QLLLPHSHFS  60
GFLGPKPCLM KQPSKPVKLY RGVRQRHWGK WVAEIRLPKN RSRLWLGTFD TAEEAAVAYD  120
TAAYKLRGDF SRLNFPHLKD YLCHGLALFK PLHSSVDAKL QAICRSLNPQ GNSGDVKIEX  180
XXXXXXXXXX XXXTVVDFSE EAAFGECNNL LLKKYPSVEI DWAAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2178136463ATERF1
3gcc_A4e-2178136463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012853381.12e-65PREDICTED: ethylene-responsive transcription factor RAP2-13-like
SwissprotO656651e-52ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A4D9AKF54e-75A0A4D9AKF5_SALSN; EREBP-like factor
STRINGMigut.L00108.1.p6e-65(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471