PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100124420051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 229aa    MW: 25905.4 Da    PI: 6.524
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100124420051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.7e-1257103354
                                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   ++h+e+ErrRR+riN  +++Lr+ll  +      K +Ka+ L ++v+ +++L
  Ote100124420051|100124420051  57 ENHKEAERRRRERINGHLDRLRSLLLCN-----SKTDKASLLAMVVQRVREL 103
                                   68*************************8.....7************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.18654103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-1357112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-957103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1358122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-1160109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MQPENSPEFS SLEQLLAGNG FGYGFPATES LCSSSFYGTD TFEFGQKHEE RRIAASENHK  60
EAERRRRERI NGHLDRLRSL LLCNSKTDKA SLLAMVVQRV RELKQQTSEI MQFDQAFPSE  120
SDEIAVNQSD DCVAGKSVVE ASVCCEDRHD LMPELIEILK PLPLSPMRAE MVTLGGRIRN  180
VMILAGDKDR TAESASLLRE QLKSLIVRSS FVGGERSKRR RMFEQRFMG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022852366.11e-101transcription factor bHLH106-like
SwissprotO806741e-53BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A2G9HQY11e-109A0A2G9HQY1_9LAMI; Uncharacterized protein
STRINGMigut.J01640.1.p5e-94(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128411718
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]