PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100124650011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 154aa MW: 17393.9 Da PI: 8.6975

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100124650011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	8.8e-11	40	81	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + r+RR+ri ++f L++l+P K++ +++Le+A++Y+k L Ote100124650011\|100124650011 40 AARQRRHRISDRFKILQSLVPGG-----SKMDTVTMLEQAIQYVKFL 81 569****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.599	32	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-14	37	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.9E-13	38	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-13	38	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.86E-14	38	85	No hit	No description
Pfam	PF00010	2.8E-8	41	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MDSSSFSNLS SSGSTSGKEK AKKKKGGAAV KLSTDPQSVA ARQRRHRISD RFKILQSLVP 60 GGSKMDTVTM LEQAIQYVKF LKNQIWLHQA XXXXXXXXXX XTSQPNNCTP LPFDHREIGF 120 SYDYYVVDRV MAECGEMELP ESWFSGEENW AMQS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011019235.1	3e-38	PREDICTED: transcription factor bHLH140-like
TrEMBL	A0A4D9A700	6e-55	A0A4D9A700_SALSN; Aprataxin
STRING	POPTR_0006s10350.1	1e-34	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11714	17	23