PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100124980041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 309aa    MW: 34805.8 Da    PI: 5.1102
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100124980041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.33.6e-29110170259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                   dDg++WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+edp+++eitY+g+H+++
  Ote100124980041|100124980041 110 DDGHSWRKYGQKDILGAKYPRSYYRCTYRlgrKCWATKQVQRSDEDPTIFEITYKGTHTCK 170
                                   7***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-28100171IPR003657WRKY domain
SuperFamilySSF1182903.27E-25108171IPR003657WRKY domain
SMARTSM007748.5E-37109171IPR003657WRKY domain
PROSITE profilePS5081120.644110167IPR003657WRKY domain
PfamPF031061.5E-26110170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MELKILTEEL AEGMARAMQL RLQLSSTSTS GEAEDMLLQR IISTFEKALR FLKWSGDVEQ  60
AQFPVPPESS GSVTRDYNES GDASKKRKLQ TTWTGQVRVV SENGLEGPGD DGHSWRKYGQ  120
KDILGAKYPR SYYRCTYRLG RKCWATKQVQ RSDEDPTIFE ITYKGTHTCK QFKSKAPAPA  180
SPEKQEPRRT YDCLQQNPIL SNFESNLRVD TEASDMQEMP AHFSFPSAFS WHENDNRCPP  240
VSALADYFST GTYQMRDYGG VPVQHSEGDI VDIMSAHAST TNSPIGGMEF SIPVEIDPDF  300
PFDISGFFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-19110170969OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101023.11e-121probable WRKY transcription factor 53
TrEMBLA0A0D5Y9911e-141A0A0D5Y991_SALMI; WRKY protein
STRINGXP_002509941.19e-94(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467