PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100125860001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

TCP

Protein Properties

Length: 145aa MW: 16347 Da PI: 10.6772

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100125860001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	64.8	3.1e-20	52	96	2	46
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsk 46 g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+ ++sk Ote100125860001\|100125860001 52 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQERLGLSQPSK 96 689*****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	17.362	54	112	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.8E-18	54	96	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MILRDTDNFS PNKNSNAEDA XXXXXXXXXX XXXXSSWSRL KDPRIVRVSR AFGGKDRHSK 60 VCTVRGLRDR RVRLSVPTAI QLYDLQERLG LSQPSKPGMM ATTPFCTPHF SIANAAFDHH 120 NVARPFGFDV GADREQSKRG DLEGK

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:11161017, ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9S7W5	2e-31	TCP13_ARATH; Transcription factor TCP13

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA821	24	99

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Yamburenko MV,Zubo YO,Börner T Abscisic acid affects transcription of chloroplast genes via protein phosphatase 2C-dependent activation of nuclear genes: repression by guanosine-3'-5'-bisdiphosphate and activation by sigma factor 5. Plant J., 2015. 82(6): p. 1030-41 [PMID:25976841] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]