PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100126050051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 118aa    MW: 13134.1 Da    PI: 6.4973
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100126050051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.73.5e-121537426
                                  ---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                                    C+f+++ G+Ck+G +CkF H+
  Ote100126050051|100126050051 15 QACSFYMQKGYCKFGVTCKFDHP 37
                                  57********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.4221139IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-41138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-71342IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-101437IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-61642IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MFDYLKLVKA AMGVQACSFY MQKGYCKFGV TCKFDHPVST LRYSPASSYA EMPGTTYVLD  60
LSSAMTLLPS YSFQEVQGEL LAGFNVVDSN SSSDSGGLMF SRRRILEPEK LHLQVFDV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010652064.14e-17PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X1
TrEMBLA0A4D9AJ675e-32A0A4D9AJ67_SALSN; Uncharacterized protein
STRINGVIT_07s0104g01460.t012e-16(Vitis vinifera)