PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100126250061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C2H2

Protein Properties

Length: 210aa MW: 23374.2 Da PI: 10.0673

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100126250061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00081	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k F++ L H +H Ote100126250061\|100126250061 78 YRCEECNKLFRSYQALGGHRANH 100 9***********99999998887 PP
2	zf-C2H2	13.2	0.00027	127	149	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C++ Fs+ L H r+H Ote100126250061\|100126250061 127 HQCPFCDRIFSSGQALGGHKRSH 149 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.866	78	105	IPR007087	Zinc finger, C2H2
Pfam	PF13912	5.4E-11	78	102	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.06	78	100	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	5.42E-9	78	149	No hit	No description
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2
Pfam	PF13912	5.4E-9	127	149	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.019	127	149	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.411	127	149	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	129	149	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MSISRRSKRI RKSIISDFDN NEQSSPLSSI SDTTPEEHVA QCLIMLSRDK WXXXXXXXXX 60 XXXXXXXXXX XIKVRGKYRC EECNKLFRSY QALGGHRANH NKIKAAPPPE KKGGLKDAAP 120 AVEAKLHQCP FCDRIFSSGQ ALGGHKRSHF VGANAISTNC STIISQHSKT ARVLNIDLNL 180 PAPVXXXXXX XXXXSSQIAI STVSDAEFVH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090203.1	1e-64	zinc finger protein ZAT4
TrEMBL	A0A4D8Y5H9	1e-75	A0A4D8Y5H9_SALSN; Uncharacterized protein
STRING	Migut.B01588.1.p	3e-54	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1095	24	80