PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100126410021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 175aa    MW: 20023 Da    PI: 10.5481
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100126410021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.11.1e-28959151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  krienk n+qvtfskRr g+lKKA+E+SvLCda+v +i+fs++gkl+ey++
  Ote100126410021|100126410021  9 KRIENKVNQQVTFSKRRSGLLKKAHEISVLCDADVGLIVFSTKGKLFEYAT 59
                                  79***********************************************86 PP
2K-box66.21.1e-221101681270
                         K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                                   +   s++ elakLk ++e Lqr+qR+l G++Le Ls+keLq+Le+qLe+slk+ Rs+K 
  Ote100126410021|100126410021 110 QSPGSWNIELAKLKGRLEVLQRNQRNLTGDNLEFLSMKELQNLEHQLETSLKRLRSRKV 168
                                   4456899**************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.469161IPR002100Transcription factor, MADS-box
CDDcd002651.02E-352104No hitNo description
SuperFamilySSF554551.96E-28274IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.034112175IPR002487Transcription factor, K-box
PfamPF014869.3E-17114167IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGRGKVELKR IENKVNQQVT FSKRRSGLLK KAHEISVLCD ADVGLIVFST KGKLFEYATD  60
SCGNSQLDWR RSFCGSKVGG VLFRLFCMER ILERYDRSSS VDGQKQPDLQ SPGSWNIELA  120
KLKGRLEVLQ RNQRNLTGDN LEFLSMKELQ NLEHQLETSL KRLRSRKVSW RGGGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-18169169MEF2 CHIMERA
6bz1_B3e-18169169MEF2 CHIMERA
6bz1_C3e-18169169MEF2 CHIMERA
6bz1_D3e-18169169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086917.19e-67truncated transcription factor CAULIFLOWER A
RefseqXP_011086918.19e-67truncated transcription factor CAULIFLOWER A
SwissprotQ424292e-66AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A4D9C5I82e-77A0A4D9C5I8_SALSN; MADS-box transcription factor, plant
STRINGXP_009792071.11e-65(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]