PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100129170001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

ZF-HD

Protein Properties

Length: 101aa MW: 10712.3 Da PI: 8.3554

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100129170001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	74.2	1.9e-23	61	101	4	46
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaAC 46 v YkeCl+NhAaslGghavDGCgEfmps+ +++++lkCaAC Ote100129170001\|100129170001 61 VAYKECLRNHAASLGGHAVDGCGEFMPSP--ATDPTSLKCAAC 101 79***********************94..457******* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.0E-19	61	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-13	61	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.182	63	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.5E-20	63	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MXXXXXXXXX XXXLSNSAVK STDAEPESPT RIRPVKLPPP PPSGNGVLKR HAPPHLHPVL 60 VAYKECLRNH AASLGGHAVD GCGEFMPSPA TDPTSLKCAA C

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085755.1	4e-33	zinc-finger homeodomain protein 9
Swissprot	Q9LHF0	4e-18	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A2G9HG83	1e-32	A0A2G9HG83_9LAMI; Uncharacterized protein
STRING	XP_009797863.1	3e-28	(Nicotiana sylvestris)
STRING	PGSC0003DMT400034368	2e-28	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1088	24	85

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]