PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100129680141

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 228aa MW: 25598 Da PI: 8.0439

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100129680141	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.9	5.7e-06	175	215	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 E++R +r+++ Lr ++P a k++s +++L +Av+Y+ksL+ Ote100129680141\|100129680141 175 EKKR-RRMRKMVKALRGIVPGA-----KRMSSVAVLDEAVRYLKSLR 215 5555.5899999*******9.....89*************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.594	165	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.63E-6	174	219	No hit	No description
SMART	SM00353	0.0015	174	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-6	175	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-8	175	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MHSNQPNFSG KPMIPVGNQV GYMQNARIAS LFDGLVAPHI PPLSNVDIQT SDACPRNFII 60 FDQTSNRSQI MLHPEISSKM FYPGFGGEMP TLQDKLIQKE ATDEREVASQ LKEDSDDIDA 120 LLSTAYEEED EGSDDEVSTA RTNAIYECSS PDSCSNYEPV SKKRRSLFRK SYGSEKKRRR 180 MRKMVKALRG IVPGAKRMSS VAVLDEAVRY LKSLRVEVKK LGVGNWKE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085262.1	1e-103	transcription factor bHLH144
Refseq	XP_011085263.1	1e-103	transcription factor bHLH144
Refseq	XP_011085264.1	1e-103	transcription factor bHLH144
TrEMBL	A0A4D8XRB4	1e-106	A0A4D8XRB4_SALSN; Uncharacterized protein
STRING	Migut.H01376.1.p	2e-83	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8124	19	24