PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100130880021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family SBP
Protein Properties Length: 230aa    MW: 26077.1 Da    PI: 8.9401
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100130880021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.91.9e-4027101276
                                   -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                           SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                                   C v+gC+adl  ++eyhrrhkvCe+hsk+p+v++ g++qrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk 
  Ote100130880021|100130880021  27 CLVDGCDADLRVCREYHRRHKVCEAHSKTPMVTIGGRQQRFCQQCSRFHSLVEFDEGKRSCRKRLDGHNRRRRKL 101
                                   9************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.1E-322388IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.00924101IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-3627103IPR004333Transcription factor, SBP-box
PfamPF031101.5E-3027100IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDSSSSSSYK RSKAPVNNNY NKEVGGCLVD GCDADLRVCR EYHRRHKVCE AHSKTPMVTI  60
GGRQQRFCQQ CSRFHSLVEF DEGKRSCRKR LDGHNRRRRK LPQPPVNHHA GGLLLFSSSS  120
THQQQQQQYA SAGGGGGRLL SFSSPQTLPD MMTHHNMINY HQSTFSHHHQ QMEEFLPSQX  180
XXXXXXXLSL LSPTPREFGN LGMEHASSFQ FCYDQGSSTS PPHTLTFTFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-28271001184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022891276.12e-51squamosa promoter-binding-like protein 16
RefseqXP_022891277.12e-51squamosa promoter-binding-like protein 16
RefseqXP_022891278.12e-51squamosa promoter-binding-like protein 16
TrEMBLA0A2G9FXF59e-53A0A2G9FXF5_9LAMI; Uncharacterized protein
STRINGXP_009764314.13e-48(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49202037