PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100131300001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 210aa MW: 23790.2 Da PI: 8.4884

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100131300001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.2e-14	23	74	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ +++ + a+i+ A++++k+L+ Ote100131300001\|100131300001 23 QRMTHIAVERNRRRQMNDYLAVLRSLMPPS---FAQRGDQASIVGGAINFVKELE 74 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.4E-13	21	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-16	21	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.23E-11	21	78	No hit	No description
PROSITE profile	PS50888	15.612	22	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-11	23	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-9	28	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MAKPVRKRRR TKPMKNKQEM ENQRMTHIAV ERNRRRQMND YLAVLRSLMP PSFAQRGDQA 60 SIVGGAINFV KELEQLHQFL EANNPANSYA NPFSNFFTFP QYSTCPSNAM SETAAERRSS 120 IADVEVMMVE SHANIKLSTK RRPKQLLNLV AGFQSIGLTV LHLNITTVDH SVLYSFSVKV 180 EDECELSTVN DIATNVHDLV GMIEEESICS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100183.2	1e-112	LOW QUALITY PROTEIN: transcription factor bHLH96-like
Swissprot	Q9C7T4	3e-74	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A0H3Y8U2	1e-115	A0A0H3Y8U2_SALMI; Basic helix-loop-helix transcription factor
STRING	XP_010272971.1	2e-95	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1996	24	62

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]