PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100131890071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TCP
Protein Properties Length: 166aa    MW: 18591.9 Da    PI: 9.4546
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100131890071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.63.9e-3370138270
                           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 
                                    g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a+ +i el+  +s+ +
  Ote100131890071|100131890071  70 SGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAESSIAELPPMNSPFP 138
                                   689***********************************************************9944433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3471152IPR005333Transcription factor, TCP
PROSITE profilePS5136931.99572130IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MKVDDQIQCK FARINNGGGK LGLNHKMDDQ YQDEEEEGDN RIGAAVDFGG GIGRFYGWPS  60
SRIVRVSRAS GGKDRHSKVL TSKGLRDRRV RLSVNTAIQF YDLQDRLGYD QPSKAVEWLL  120
KAAESSIAEL PPMNSPFPDT PKQMSAEKRT STGXXXXXXX XXXXXF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-2477131155Putative transcription factor PCF6
5zkt_B7e-2477131155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00639PBMTransfer from Lj6g3v1946420Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096599.11e-72transcription factor TCP2-like
RefseqXP_011096600.11e-72transcription factor TCP2-like
RefseqXP_020554008.11e-72transcription factor TCP2-like
SwissprotQ9C7585e-41TCP24_ARATH; Transcription factor TCP24
TrEMBLA0A4D9B5Y76e-79A0A4D9B5Y7_SALSN; Uncharacterized protein
STRINGMigut.M00891.1.p6e-67(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Publications ? help Back to Top
  1. Wang H,Mao Y,Yang J,He Y
    TCP24 modulates secondary cell wall thickening and anther endothecium development.
    Front Plant Sci, 2015. 6: p. 436
    [PMID:26157444]
  2. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]