PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100132910061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LSD
Protein Properties Length: 182aa    MW: 18875.1 Da    PI: 8.2214
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100132910061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.12.8e-13731125
                       zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                  C+gCrt+L YPrGA++V+Ca+C+ V
  Ote100132910061|100132910061  7 CSGCRTVLLYPRGATNVCCAICNVV 31
                                  ***********************98 PP
2zf-LSD138.91.4e-124670125
                       zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                  CggCrtlL+  rGA sVRC++C+tV
  Ote100132910061|100132910061 46 CGGCRTLLMHARGAASVRCSCCHTV 70
                                  ************************9 PP
3zf-LSD148.91.1e-1595119125
                       zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                                   Cg+C+t+L+YP+GApsV+Ca+C+++
  Ote100132910061|100132910061  95 CGNCHTMLMYPAGAPSVKCAICHFI 119
                                   ***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.5E-12434IPR005735Zinc finger, LSD1-type
PfamPF069432.4E-11731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.5E-154373IPR005735Zinc finger, LSD1-type
PfamPF069433.0E-114670IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:3.90.10.101.2E-459117No hitNo description
TIGRFAMsTIGR010539.2E-1392120IPR005735Zinc finger, LSD1-type
PfamPF069433.7E-1495119IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MQSQLICSGC RTVLLYPRGA TNVCCAICNV VTAVPPAGME MVQLICGGCR TLLMHARGAA  60
SVRCSCCHTV NLVPAPAAAA AAPPPAHNNI AHVNCGNCHT MLMYPAGAPS VKCAICHFIT  120
NSNIGDTRVP IPVHRPSGIS TSALTPTYPV PHSHNQTVVV QNPMTVDESG KLVNNVVVGV  180
TT
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy. {ECO:0000269|PubMed:10550898, ECO:0000269|PubMed:11595797, ECO:0000269|PubMed:11844114, ECO:0000269|PubMed:12732715, ECO:0000269|PubMed:15347794, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:18055613, ECO:0000269|PubMed:18790826, ECO:0000269|PubMed:20456049, ECO:0000269|PubMed:21097903}.
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By methyl viologen. {ECO:0000269|PubMed:20456049}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096731.13e-96protein LSD1
RefseqXP_020551343.18e-94uncharacterized protein LOC105167533
SwissprotP940775e-63LSD1_ARATH; Protein LSD1
SwissprotQ2QMB34e-63LOL2_ORYSJ; Protein LOL2
SwissprotQ6ASS25e-63LOL3_ORYSJ; Protein LOL3
TrEMBLA0A4D9AS331e-95A0A4D9AS33_SALSN; Uncharacterized protein
STRINGMigut.M01935.1.p2e-88(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Spedaletti V, et al.
    Characterization of a lysine-specific histone demethylase from Arabidopsis thaliana.
    Biochemistry, 2008. 47(17): p. 4936-47
    [PMID:18393445]
  3. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]
  4. Szechyńska-Hebda M,Czarnocka W,Hebda M,Bernacki MJ,Karpiński S
    PAD4, LSD1 and EDS1 regulate drought tolerance, plant biomass production, and cell wall properties.
    Plant Cell Rep., 2016. 35(3): p. 527-39
    [PMID:26754794]
  5. Czarnocka W, et al.
    The dual role of LESION SIMULATING DISEASE 1 as a condition-dependent scaffold protein and transcription regulator.
    Plant Cell Environ., 2017. 40(11): p. 2644-2662
    [PMID:28555890]
  6. Bernacki MJ, et al.
    LSD1-, EDS1- and PAD4-dependent conditional correlation among salicylic acid, hydrogen peroxide, water use efficiency and seed yield in Arabidopsis thaliana.
    Physiol Plant, 2019. 165(2): p. 369-382
    [PMID:30461017]