PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100133420111

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NF-YB

Protein Properties

Length: 113aa MW: 12015.6 Da PI: 5.171

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100133420111	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	63.2	5.5e-20	23	66	2	45
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisf 45 r d+++Pian+ rim++vlP +ak+++daketvqec +efisf Ote100133420111\|100133420111 23 RSPDEYMPIANILRIMRRVLPPHAKVADDAKETVQECLTEFISF 66 67799**************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.4E-16	21	66	IPR009072	Histone-fold
SuperFamily	SSF47113	1.68E-11	26	66	IPR009072	Histone-fold
Pfam	PF00808	3.4E-11	29	66	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MEENNAEGGA NPVEGGAEAG VMRSPDEYMP IANILRIMRR VLPPHAKVAD DAKETVQECL 60 TEFISFDPLR VAAPAIPPPN QVRPPLRRFM GGRGGGAGEG SSSAGGEFRH FGM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	9e-19	21	66	5	50	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008227161.2	2e-19	PREDICTED: nuclear transcription factor Y subunit B-9-like
Refseq	XP_028768558.1	6e-20	nuclear transcription factor Y subunit B-9-like
TrEMBL	A0A314YDU0	4e-19	A0A314YDU0_PRUYE; Uncharacterized protein
STRING	XP_009355200.1	2e-18	(Pyrus x bretschneideri)