PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100133910091
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 338aa    MW: 38780.3 Da    PI: 5.4703
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100133910091genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind591.3e-183210614103
                                   GGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
                  HSF_DNA-bind  14 elkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                                    l+++isw  ++gnsfvv+++ efa+++Lp+ Fkh+nf+SF       gF+k+++++         weF+++ F +g+++l
  Ote100133910091|100133910091  32 XLDSIISWGdHRGNSFVVWKPVEFARTILPRNFKHNNFSSF-------GFRKTDTDK---------WEFANEGFVRGQRHL 96 
                                   6899*****8889***************************9.......9****9998.........*************** PP

                                   XXXXXXXXXX CS
                  HSF_DNA-bind  94 lekikrkkse 103
                                   l+ki+r++s+
  Ote100133910091|100133910091  97 LKKIQRRRSH 106
                                   *******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.0E-2331103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-1532103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.9E-1832103IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.13E-1733103IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
LFDGAEAVGV VARSADSTVS VQSLRSXXXX XXLDSIISWG DHRGNSFVVW KPVEFARTIL  60
PRNFKHNNFS SFGFRKTDTD KWEFANEGFV RGQRHLLKKI QRRRSHHSHQ PSNEVEINEL  120
RRERSLMMQE VTELQHEQRG TVERIEIVKD KLEAAERRQK QLISFLARML DKHAFLPRLP  180
HKREQKSIAL PRTMRKFVKH QQRELEAENW ARRVEEEDEL GMVDELLHIP EKDDSMQPLL  240
LQDGVMNPTP QSANDMLVVE DGVPEFLMAG NESMVSEDAW GMGLEAGMCS YNTDPWGGLS  300
NNNALDLGVS SELSDISELG LMQSGMNKWL VEEEPPIN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094419.17e-94heat stress transcription factor A-2c isoform X1
TrEMBLA0A2R6RXZ92e-72A0A2R6RXZ9_ACTCH; Heat stress transcription factor A-3 like
STRINGXP_009621033.11e-70(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87272025