PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100135270001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 218aa    MW: 25092 Da    PI: 4.833
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100135270001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.8e-1970123356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k+++++++q++ Le+ Fe ++++  e++ +LAk+lgL+ rqV +WFqNrRa++k
  Ote100135270001|100135270001  70 KKRRLSHDQVRFLEKSFEVENKLEPERKIQLAKELGLQPRQVAIWFQNRRARYK 123
                                   56689************************************************9 PP
2HD-ZIP_I/II113.81.1e-3669153185
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   ekkrrls++qv++LE+sFe e+kLeperK +la+eLglqprqva+WFqnrRAR+ktk lEk+y++Lk++ ++++ e    +
  Ote100135270001|100135270001  69 EKKRRLSHDQVRFLEKSFEVENKLEPERKIQLAKELGLQPRQVAIWFQNRRARYKTKVLEKEYASLKARGENVEVEAVDCK 149
                                   69***********************************************************************99988877 PP

                   HD-ZIP_I/II  82 keve 85 
                                   +e +
  Ote100135270001|100135270001 150 QEEA 153
                                   7765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.09E-1958125IPR009057Homeodomain-like
PROSITE profilePS5007117.52465125IPR001356Homeobox domain
SMARTSM003891.1E-1868129IPR001356Homeobox domain
PfamPF000461.7E-1670123IPR001356Homeobox domain
CDDcd000862.37E-1770125No hitNo description
Gene3DG3DSA:1.10.10.601.1E-1872132IPR009057Homeodomain-like
PRINTSPR000313.9E-696105IPR000047Helix-turn-helix motif
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PRINTSPR000313.9E-6105121IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDNSSMANLL LKNESSEVLH SLSWVPNSSP SFHGSASMGD ENTSEKPFFA QIDSTKLDEE  60
FNVCFHQPEK KRRLSHDQVR FLEKSFEVEN KLEPERKIQL AKELGLQPRQ VAIWFQNRRA  120
RYKTKVLEKE YASLKARGEN VEVEAVDCKQ EEAKSDVLDS YSPHCSNSQE EDDTLCKKSL  180
VPFACFPKLE MDGCDDLQPN SCNLGFPVQD QGTWFWQY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071034.16e-82homeobox-leucine zipper protein HAT5-like
SwissprotQ6K4985e-31HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
SwissprotQ9XH375e-31HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBLA0A4D9BNR61e-77A0A4D9BNR6_SALSN; Homeobox-leucine zipper protein
STRINGXP_009766848.13e-62(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]