PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100136550081

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

E2F/DP

Protein Properties

Length: 296aa MW: 33113.6 Da PI: 4.1936

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100136550081	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	87.1	1.2e-27	19	84	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg Ote100136550081\|100136550081 19 RYDSSLGLLTKKFINLIKHAEDGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKIKNRIQWKG 84 6899****************************...99..**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.6E-29	17	86	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.18E-17	19	82	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM01372	7.4E-35	19	84	IPR003316	E2F/DP family, winged-helix DNA-binding domain
Pfam	PF02319	8.4E-25	21	84	IPR003316	E2F/DP family, winged-helix DNA-binding domain
SuperFamily	SSF144074	3.14E-33	98	201	No hit	No description
Pfam	PF16421	1.6E-33	101	199	IPR032198	E2F transcription factor, CC-MB domain
CDD	cd14660	1.12E-41	112	201	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005667	Cellular Component	transcription factor complex
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MTNVGSPSGN NLTPVGPCRY DSSLGLLTKK FINLIKHAED GILDLNKAAD TLEVQKRRIY 60 DITNVLEGIG LIEKKIKNRI QWKGLDVSKP GEVDESLPGI QEEIENLNIE ERKLDERIRE 120 MQEKLRGLSE DENNQRWLFV TEEDIKCLPC FQNETLIAIK APHGTTLEVP DPDEAVDYPQ 180 RRYRIVLRST MGPIDVYLVS QFEENFEEIN AVEEQACIPE TPSANNNTSA PSSRLEIGGD 240 ETAAQGVETQ RMCSEASTSQ DFVSGILKIV PEVDSDADYW LLSDADXXXX XXTCGA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1cf7_A	1e-27	14	85	2	74	PROTEIN (TRANSCRIPTION FACTOR E2F-4)
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Involved in the control of cell-cycle progression from G1 to S phase and from G2 to M phase. Stimulates cell proliferation and delays differentiation. Represses cell enlargement and endoreduplication in auxin-free conditions. {ECO:0000269\|PubMed:11669580, ECO:0000269\|PubMed:11786543, ECO:0000269\|PubMed:11862494, ECO:0000269\|PubMed:11891240, ECO:0000269\|PubMed:12913157, ECO:0000269\|PubMed:16055635, ECO:0000269\|PubMed:16514015}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by light and by auxin. May be up-regulated by E2FA. {ECO:0000269\|PubMed:16055635, ECO:0000269\|PubMed:16514015, ECO:0000269\|PubMed:18424613}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090314.1	0.0	transcription factor E2FB isoform X1
Refseq	XP_020552667.1	0.0	transcription factor E2FB isoform X2
Swissprot	Q9FV71	1e-124	E2FB_ARATH; Transcription factor E2FB
TrEMBL	A0A068UEG0	1e-166	A0A068UEG0_COFCA; Uncharacterized protein
STRING	Migut.N02463.1.p	1e-164	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1077	24	84

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wu M,Liu L,Hijazi H,Chan C A multi-layer inference approach to reconstruct condition-specific genes and their regulation. Bioinformatics, 2013. 29(12): p. 1541-52 [PMID:23610368] Kobayashi K, et al. Transcriptional repression by MYB3R proteins regulates plant organ growth. EMBO J., 2015. 34(15): p. 1992-2007 [PMID:26069325]