PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100137660061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NF-YC

Protein Properties

Length: 52aa MW: 6243.83 Da PI: 9.1621

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100137660061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	75.3	8.9e-24	1	49	4	49
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllsk 49 +fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++k Ote100137660061\|100137660061 1 MFWTYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAK 49 6999887889**************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.0E-14	6	49	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	9.1E-19	12	49	IPR009072	Histone-fold
Pfam	PF00808	3.1E-9	20	49	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 52 aa Download sequence Send to blast
MFWTYQRQEI EQVNDFKNHQ LPLARIKKIM KADEDVRMIS AEAPILFAKX XL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-19	6	49	3	46	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269\|PubMed:17322342}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010460536.1	2e-29	PREDICTED: nuclear transcription factor Y subunit C-4-like isoform X1
Refseq	XP_010460545.1	2e-29	PREDICTED: nuclear transcription factor Y subunit C-4-like isoform X2
Swissprot	Q9FMV5	7e-30	NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBL	R0GDZ3	8e-28	R0GDZ3_9BRAS; Uncharacterized protein
STRING	Bostr.0568s0464.1.p	7e-29	(Boechera stricta)
STRING	XP_010460536.1	7e-29	(Camelina sativa)

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Qi M, et al. QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests. Plant Biotechnol. J., 2019. 17(1): p. 252-263 [PMID:29878511]