PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100139820011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 187aa MW: 20995.1 Da PI: 9.0769

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100139820011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	46.1	9.5e-15	128	166	21	59
-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +sYYrCt gC+vkk+v+r ++d+ vv++tYeg+H+h+ Ote100139820011\|100139820011 128 RKSYYRCTRDGCNVKKQVQRLSRDEGVVVTTYEGTHTHP 166 469***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-17	106	167	IPR003657	WRKY domain
SuperFamily	SSF118290	5.49E-18	113	167	IPR003657	WRKY domain
PROSITE profile	PS50811	18.544	116	168	IPR003657	WRKY domain
SMART	SM00774	7.0E-18	121	167	IPR003657	WRKY domain
Pfam	PF03106	4.8E-12	129	166	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MEDFGPKLHL SSSVGNPTAP PPLTPTTAAG DFYRNGSGSS SSCFEGFMGG XXXXXXXXXX 60 IDFHSSQTAK SYVDEKPKIE RLLSEERIDA PSAFGGGKKK GEKKVRKPKF AFQTRSQVDI 120 LDDGYRWRKS YYRCTRDGCN VKKQVQRLSR DEGVVVTTYE GTHTHPVEKP SDNFEQILSQ 180 MQIYPPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-16	111	165	7	74	Probable WRKY transcription factor 4
2lex_A	6e-16	111	165	7	74	Probable WRKY transcription factor 4

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020554282.1	9e-55	probable WRKY transcription factor 75 isoform X1
TrEMBL	A0A2G9HPG3	2e-49	A0A2G9HPG3_9LAMI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2204	24	61