PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100142870031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family G2-like
Protein Properties Length: 274aa    MW: 30733.1 Da    PI: 6.958
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100142870031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like61.71.4e-194178138
                       G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkv 38
                                  kprl+Wt +LHerF+eav+qLGG+ekAtPk++l+lm++
  Ote100142870031|100142870031 41 KPRLKWTLDLHERFIEAVKQLGGAEKATPKSVLKLMGI 78
                                  79**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-153978IPR009057Homeodomain-like
SuperFamilySSF466894.66E-64078IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-134180IPR006447Myb domain, plants
PfamPF143796.6E-22115160IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MYHCHHHQGK NVHPVPQEKH MLLQGVTGTG DSGLVLSSDA KPRLKWTLDL HERFIEAVKQ  60
LGGAEKATPK SVLKLMGIXX XXNIVSLEES PSAKADRVLE VNGPHLPNQP TKSLQLDEAI  120
QMQIEVQQRL HEQMEVQRHL QMRIEAQGKY LQDVLEKAQE SLGRQNVGTL GLETAKVQLS  180
ELVSQVSKQS LDSGIKQVSD CCHQQLYEKH LGVKPMTATE QVIDDKQSLS MSIGLEPNAK  240
WNNTIKQDEQ RSCSDLKLPF FPTKLDLQAT SSWI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094327.21e-86myb-related protein 2 isoform X1
RefseqXP_020553351.11e-86myb-related protein 2 isoform X2
SwissprotQ9SQQ96e-68PHL9_ARATH; Myb-related protein 2
TrEMBLA0A4D8ZZ201e-104A0A4D8ZZ20_SALSN; Uncharacterized protein
STRINGVIT_08s0007g07580.t015e-80(Vitis vinifera)
STRINGEOY111981e-79(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29462451
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]