PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100143310001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 188aa    MW: 21413.8 Da    PI: 9.6798
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100143310001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.31.4e-32109167159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H h+
  Ote100143310001|100143310001 109 LDDGYRWRKYGQKAVKNNKFPRSYYRCTQQGCNVKKQVQRLSRDEGVVVTTYEGVHSHP 167
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-3494167IPR003657WRKY domain
SuperFamilySSF1182902.48E-29101168IPR003657WRKY domain
PROSITE profilePS5081130.182104169IPR003657WRKY domain
SMARTSM007742.5E-38109168IPR003657WRKY domain
PfamPF031062.8E-26110167IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDSYPAASNF QSLSSSQNSH LSMINMSAQS RDHHHRQLLQ HHEPNSEYMG FITSMENVDG  60
SSTLAATSGI EGGNPKPEND EAKTGKGKGE KKLRKPRFAF QTRSQVDILD DGYRWRKYGQ  120
KAVKNNKFPR SYYRCTQQGC NVKKQVQRLS RDEGVVVTTY EGVHSHPIQK STDNFEHILS  180
QMQIYTPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-2899168776Probable WRKY transcription factor 4
2lex_A4e-2899168776Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615508.12e-71PREDICTED: probable WRKY transcription factor 75
RefseqXP_016446514.12e-71PREDICTED: probable WRKY transcription factor 75
TrEMBLA0A4D9ADA22e-73A0A4D9ADA2_SALSN; Uncharacterized protein
STRINGXP_009615508.19e-71(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22042461