PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100144300031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 218aa    MW: 25209.6 Da    PI: 9.5261
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100144300031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.31.3e-22170211142
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-S CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversa 42 
                                   ldDg++WrKYG+K+vk+s++pr+YY+C+ +gCpvkk+ver++
  Ote100144300031|100144300031 170 LDDGFKWRKYGKKMVKNSPNPRNYYKCSVEGCPVKKRVERDK 211
                                   59**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-24157211IPR003657WRKY domain
SuperFamilySSF1182902.88E-20163211IPR003657WRKY domain
PROSITE profilePS5081122.974165218IPR003657WRKY domain
SMARTSM007744.5E-18170218IPR003657WRKY domain
PfamPF031065.7E-17171211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
GPSDYYFSHL LVITLKHHLR KFFPHGRKLT KHPTQIHLYI HTYIYTPMPQ NKHSRNDMIM  60
AENYYHNTNI SGASFGSEDS PTPTRGFSHE SGGLDPSDFL QMDDWLDSLQ DDFSSFSHLL  120
NYVPHELEVN SSRASNGGFS EGTMINRGGR EKKGIREKVA FKTKSEIDIL DDGFKWRKYG  180
KKMVKNSPNP RNYYKCSVEG CPVKKRVERD KXXXXXXX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-17160209756Probable WRKY transcription factor 4
2lex_A4e-17160209756Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022882273.12e-45probable WRKY transcription factor 50 isoform X2
TrEMBLA0A0D5YAG46e-52A0A0D5YAG4_SALMI; WRKY protein
STRINGXP_008220527.17e-39(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21242462