PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100144650191
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GATA
Protein Properties Length: 303aa    MW: 32890.3 Da    PI: 6.7934
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100144650191genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.5e-17222258135
                          GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C++Cgt++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  Ote100144650191|100144650191 222 CRHCGTSEksTPMMRRGPEGPRTLCNACGLMWANKGT 258
                                   **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.0E-1278113IPR010399Tify domain
PROSITE profilePS5132014.85578113IPR010399Tify domain
PfamPF062001.0E-1281112IPR010399Tify domain
PROSITE profilePS5101711.439146188IPR010402CCT domain
PfamPF062036.2E-14153188IPR010402CCT domain
PROSITE profilePS501149.974216278IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-13216282IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-13219273No hitNo description
CDDcd002022.42E-15221270No hitNo description
Gene3DG3DSA:3.30.50.102.8E-16221263IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440222249IPR000679Zinc finger, GATA-type
PfamPF003201.7E-15222258IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDGIHGGETG MMHYLQDQNH HGLHHHHMSN GNAMDQDEHG ENNNIGTSGG VDEVMDGDAG  60
ANIGSQNDNG ALIPHVGGSE NGDQLTLSFQ GQVYVFDSVS PEKVQAVLLL LGGREVPPNI  120
PTLPVSSPTH RGLSTTPHKF NVPQRLASXX XXFREKRKER NFDKKIRYTV RKEVALRMQR  180
NKGQFTSSKP NHDDSASAAS CWDSNQSWRT DGNGSHVQDI SCRHCGTSEK STPMMRRGPE  240
GPRTLCNACG LMWANKGTLR DLSKTPPLPV GANPLQNRSE GNGSFEAEEM VLSVAGNGND  300
SSS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072744.11e-166GATA transcription factor 28
SwissprotQ8GXL71e-102GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A4D8YWD21e-176A0A4D8YWD2_SALSN; Uncharacterized protein
STRINGMigut.I01184.1.p1e-153(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]