PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100145930151
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 241aa    MW: 27578.2 Da    PI: 7.6073
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100145930151genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21e-143782148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg++T+ E+  ++++ ++lG++ W++Ia +++  Rt++++k++w+++l
  Ote100145930151|100145930151 37 RGNFTPHEEGMIIHLQALLGNK-WAAIATYLP-QRTDNDIKNYWNTHL 82
                                  89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-101742IPR009057Homeodomain-like
SuperFamilySSF466896.67E-211890IPR009057Homeodomain-like
PROSITE profilePS500904.1351831IPR017877Myb-like domain
PROSITE profilePS5129423.3133286IPR017930Myb domain
SMARTSM007178.4E-133684IPR001005SANT/Myb domain
PfamPF002494.5E-133782IPR001005SANT/Myb domain
CDDcd001672.07E-93982No hitNo description
Gene3DG3DSA:1.10.10.601.2E-204387IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRPPCCDKI GFKKGLMRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA  60
AIATYLPQRT DNDIKNYWNT HLKKKLKKFQ SSLDPQMASD PTAYTHFISK NYGRVVDSSN  120
NMSTAENSTV YASSAENISR LLEGWMRSSP LQPHNITNSY QNGYGDFGKP FTTDQNDDAV  180
IQYMPQKMEH EVPTTHHDSE RLIDEEKMKI DNDPPLSFLE KWLLDESAGQ VEGVVELTTI  240
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-17188640108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066033.15e-91myb-related protein 306-like
RefseqXP_027175430.15e-91myb-related protein 306
SwissprotB3VTV74e-83MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A059PRS11e-111A0A059PRS1_SALMI; MYB-related transcription factor
STRINGVIT_08s0056g00800.t012e-81(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]