PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100146290031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family CPP
Protein Properties Length: 227aa    MW: 24898.3 Da    PI: 6.7452
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100146290031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR231.5e-071251742
                           TCR 17 YCeCfaagkkCseeCkCedCkNkeek 42
                                  YCeCfa+g++C+  C+C +C+N+ e+
  Ote100146290031|100146290031  1 YCECFASGVYCDG-CNCVNCHNNVEN 25
                                  *************.********9875 PP
2TCR53.16.5e-17109148140
                           TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                   k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Ote100146290031|100146290031 109 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNYE 148
                                   589***********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163432.1721149IPR005172CRC domain
SMARTSM011140.0071125IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.5E-5122IPR005172CRC domain
SMARTSM011146.2E-20109150IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.6E-13112147IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
YCECFASGVY CDGCNCVNCH NNVENEAARR EAVEATLERN PNAFRPKIAS SPHGTRDSGN  60
ASCWVVIPGE QPNCLLWGSI TMLMSPEVLE VVDSMHMQEE AGEVLVSGKH NKGCHCKKSG  120
CLKKYCECFQ ANILCSENCK CMDCKNYEGS EERQALFHGE HANNIAYIQQ AANAAITGAI  180
GSSGYGSPPL NKKRKGHDLL YGSTMKDPVH RLGQLQQVLL FALFVFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-21115825132Protein lin-54 homolog
5fd3_B1e-21115825132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093606.11e-110protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD15e-90TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A4D9C5L51e-112A0A4D9C5L5_SALSN; Uncharacterized protein
STRINGXP_006475649.11e-106(Citrus sinensis)
STRINGXP_006451190.11e-106(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455