PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100147490081

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 149aa MW: 17050.2 Da PI: 7.5059

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100147490081	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.6	3.5e-11	39	80	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + r+RR+ri ++f+ Lr+l+P K++ +++Le+A++Y+k L Ote100147490081\|100147490081 39 AARQRRHRISHRFQILRSLVPGG-----SKMDTVSMLEEAIQYVKFL 80 569****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.834	31	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-14	36	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.22E-14	37	84	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.1E-12	37	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-13	37	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-8	40	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MMVSSSSSNP SSCDSTSAAA KEKAKEKKVK LSTDPQSVAA RQRRHRISHR FQILRSLVPG 60 GSKMDTVSML EEAIQYVKFL KNQIWLLHHA MINFVGDPSF SSSQPDSCGV LPFDRREFDF 120 YYNYDEVDCG RMELPESWFS GEENWAMQR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018859333.1	3e-37	PREDICTED: transcription factor bHLH140-like
Swissprot	Q9M041	2e-27	BH140_ARATH; Transcription factor bHLH140
TrEMBL	A0A4D9A700	2e-49	A0A4D9A700_SALSN; Aprataxin
STRING	XP_010264777.1	3e-34	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11714	17	23

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]