PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100147760051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 207aa MW: 23575.5 Da PI: 8.2154

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100147760051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	111.9	6.8e-35	14	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrF+Ptdee+v +yL +k+ +++l++ vi+e+d++ ++Pw+Lp e+++yfFs++ g++++r+t sg Ote100147760051\|100147760051 14 LPPGFRFQPTDEEIVFQYLSRKTFSHPLPA-LVIPEIDVFGFDPWQLPG---DPEQDMYFFSNHG----CGNESERSTPSG 86 79************************99.78***********3...4567999975....57899**** PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +Wkat ++k++ s+ k vg++kt+vfy ++g++tdW+mh+y + Ote100147760051\|100147760051 87 FWKATASSKQINSSkKMPIVGIRKTFVFY----RSGVRTDWIMHQYCI 130 ********97344459*****....7999*******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.32E-42	12	157	IPR003441	NAC domain
PROSITE profile	PS51005	42.408	14	157	IPR003441	NAC domain
Pfam	PF02365	7.5E-23	15	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MDKLNFVRDG GRRLPPGFRF QPTDEEIVFQ YLSRKTFSHP LPALVIPEID VFGFDPWQLP 60 GDPEQDMYFF SNHGCGNESE RSTPSGFWKA TASSKQINSS KKMPIVGIRK TFVFYRSGVR 120 TDWIMHQYCI SLSENNALQG NSLIRIGDWS LCRVFMKKRS RRAEGEERGS NDLWRVDMGD 180 ADSCCASSSS PHSDPNIFSE VSSSSRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-32	14	160	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-32	14	160	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-32	14	160	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-32	14	160	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	7e-32	14	160	20	171	NAC domain-containing protein 19
3swm_B	7e-32	14	160	20	171	NAC domain-containing protein 19
3swm_C	7e-32	14	160	20	171	NAC domain-containing protein 19
3swm_D	7e-32	14	160	20	171	NAC domain-containing protein 19
3swp_A	7e-32	14	160	20	171	NAC domain-containing protein 19
3swp_B	7e-32	14	160	20	171	NAC domain-containing protein 19
3swp_C	7e-32	14	160	20	171	NAC domain-containing protein 19
3swp_D	7e-32	14	160	20	171	NAC domain-containing protein 19
4dul_A	7e-32	14	160	17	168	NAC domain-containing protein 19
4dul_B	7e-32	14	160	17	168	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269\|PubMed:24243147}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073111.1	1e-67	NAC domain-containing protein 83
Swissprot	O22798	1e-49	NAC41_ARATH; NAC domain-containing protein 41
TrEMBL	A0A4D8ZWT5	1e-84	A0A4D8ZWT5_SALSN; Uncharacterized protein
STRING	Migut.D01296.1.p	1e-65	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1387	23	77

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]