PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100148620031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 231aa    MW: 26944.4 Da    PI: 6.7324
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100148620031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-181360148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg W+ eEd ll+++++ +G g+W+ +ar+ g++Rt+k+c+ rw +yl
  Ote100148620031|100148620031 13 RGTWSSEEDSLLINYIAVHGEGRWNDVARYSGLNRTGKSCRFRWKNYL 60
                                  89********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.3864IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-211063IPR009057Homeodomain-like
SMARTSM007171.1E-151262IPR001005SANT/Myb domain
PfamPF002491.9E-161360IPR001005SANT/Myb domain
SuperFamilySSF466894.21E-231491IPR009057Homeodomain-like
CDDcd001671.61E-111560No hitNo description
PROSITE profilePS500905.80861116IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.7E-106493IPR009057Homeodomain-like
SMARTSM007171.865137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDAKEETVSS LKRGTWSSEE DSLLINYIAV HGEGRWNDVA RYSGLNRTGK SCRFRWKNYL  60
QPNVRRGNFT VAEQLRIAEL HCLYGNRWSK IAEFXXXXXX XXXXXXXXTR VHKRAKQLEY  120
DTTGVELREF VRDIWLPTLS QQIHASPCNN NNLGNIVTKN FQGGSEALQM NCWSHDFSCE  180
ADQVKLNHHE FEFHDHIASE LDFRQHYYDL HSPYIGCSDS SAWFNGEFSN I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-1599423107MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107921.12e-47transcription factor MYB108-like
TrEMBLA0A059PRK71e-64A0A059PRK7_SALMI; MYB-related transcription factor
STRINGXP_006492457.12e-46(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2471222