PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100149350041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 123aa    MW: 13434.4 Da    PI: 9.0121
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100149350041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.00035751121254
                                   HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   R +++ +++  L +l+ +      +K + a++L +A+ YI+ L
  Ote100149350041|100149350041  75 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFL 112
                                   6678889999999999998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.51263112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-973118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-773117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.01E-673117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MQHKSLENCE RQILNNSSNA AASYAYCAGN IEFAAAKYCA TSEIFMKCNS NSDGGAAKKL  60
KANPITSSQT GIKVRKEKLG DRITALHQLV SPFGKTDTAS VLLEAIGYIR FLHRQIEVTF  120
LCT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078299.12e-34transcription factor bHLH68
SwissprotQ8S3D12e-24BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A4D8Y0J29e-40A0A4D8Y0J2_SALSN; Uncharacterized protein
STRINGXP_007160320.13e-31(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15192247
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]