PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100149350111

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 156aa MW: 17200.6 Da PI: 9.7098

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100149350111	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.5	0.00055	108	145	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L +l+ + +K + a++L +A+ YI+ L Ote100149350111\|100149350111 108 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFL 145 6678889999999999998.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.512	96	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-6	106	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.48E-5	106	150	No hit	No description
SuperFamily	SSF47459	1.96E-9	106	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
LIRTANGGLR RQRLVYQQRG FSGEEDKAEI GHKMQHKSLE NCERQILNNS SNAAASYAYC 60 AGNIEFAAAK YCATSEIFMK CNSNSDGGAA KKLKANPITS SQTGIKVRKE KLGDRITALH 120 QLVSPFGKTD TASVLLEAIG YIRFLHRQIE VTFLCT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078299.1	6e-38	transcription factor bHLH68
TrEMBL	A0A4D8Y0J2	2e-39	A0A4D8Y0J2_SALSN; Uncharacterized protein
STRING	XP_010249647.1	1e-33	(Nelumbo nucifera)
STRING	XP_010254048.1	9e-34	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15444	5	6