 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Ote100150510001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
| Family |
C2H2 |
| Protein Properties |
Length: 205aa MW: 23124.9 Da PI: 10.5503 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ote100150510001 | genome | OteDB | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12.7 | 0.0004 | 113 | 135 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
ykC++C+k + +s+ k H +t+
Ote100150510001|100150510001 113 YKCEKCSKKYAVHSDWKAHSKTC 135
9******************9998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 205 aa
Download sequence Send
to blast |
MRAKLNWQAD ALLNLRRNRK STAAAAAVDA VRSSAAAAFI QQAAEEPAGK SKQLHRRGHN 60
LPWKLRQKST KEVKRKVYLC PEPSCVHHDP ARALGDLTGI KKHYSRKHGE KKYKCEKCSK 120
KYAVHSDWKA HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAQESAR NLNPPSLSSH 180
LLGLSQQDQM NPSPXXXXXX XXXXS
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
