PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100150630022

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 377aa MW: 40738.4 Da PI: 9.818

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100150630022	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	48.2	2.1e-15	317	355	22	59
EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++YY+C++ gCp++k+ver+++dp+++++tYegeH+h+ Ote100150630022\|100150630022 317 KGYYKCSTVrGCPARKHVERANDDPSMLIVTYEGEHRHT 355 68**9888**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	3.8E-17	261	307	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	5.6E-16	304	355	IPR003657	WRKY domain
SuperFamily	SSF118290	6.15E-15	307	355	IPR003657	WRKY domain
SMART	SM00774	1.9E-17	309	356	IPR003657	WRKY domain
Pfam	PF03106	1.1E-12	316	354	IPR003657	WRKY domain
PROSITE profile	PS50811	17.729	317	357	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MPRSPSPLLY LPIPLSLHLI HISLIFLLQS EIVTDEIVVK IISPRVSRKQ LEKMAVDLLG 60 YTNFNEQMAI QDAATAGLKS MEHLIRAVSH QQQQQNQQLD CRDITDFTVS KFRKVITILN 120 RTGHARFRRG PVQPHSSPLP PVHLQDSTPA STQPGYPVQP LNLFSLSPAP VVPQSPATVQ 180 PLTLDFTKPG TCAGKDCGDA TNKDGLSPST ALSNSGNSSS TFVSSITGEG SVSNGKGGSP 240 SIFLTPAAPA VSSGKPPLSG KRCREHDHSD NISGGKTSGS SRCHCKKRKS RVKRVIRVPA 300 ISSKVADIPA DEYSWRKGYY KCSTVRGCPA RKHVERANDD PSMLIVTYEG EHRHTQGAMQ 360 EIPAAGAPAQ LVVFESS

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MPRSPSPLLY LPIPLSLHLI HISLIFLLQS EIVTDEIVVK IISPRVSRKQ LEKMAVDLLG  60
YTNFNEQMAI QDAATAGLKS MEHLIRAVSH QQQQQNQQLD CRDITDFTVS KFRKVITILN  120
RTGHARFRRG PVQPHSSPLP PVHLQDSTPA STQPGYPVQP LNLFSLSPAP VVPQSPATVQ  180
PLTLDFTKPG TCAGKDCGDA TNKDGLSPST ALSNSGNSSS TFVSSITGEG SVSNGKGGSP  240
SIFLTPAAPA VSSGKPPLSG KRCREHDHSD NISGGKTSGS SRCHCKKRKS RVKRVIRVPA  300
ISSKVADIPA DEYSWRKGYY KCSTVRGCPA RKHVERANDD PSMLIVTYEG EHRHTQGAMQ  360
EIPAAGAPAQ LVVFESS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269\|PubMed:26433201}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00464	DAP	Transfer from AT4G31550	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269\|PubMed:11722756, ECO:0000269\|PubMed:26433201}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082056.1	1e-159	probable WRKY transcription factor 17
Swissprot	Q9SV15	4e-99	WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBL	A0A2G9GIC6	1e-160	A0A2G9GIC6_9LAMI; Uncharacterized protein
STRING	Migut.A00430.1.p	1e-156	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3145	22	50

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Jiang CH, et al. Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis. J. Exp. Bot., 2016. 67(1): p. 157-74 [PMID:26433201] Ali MA, et al. Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis. J. Plant Physiol., 2018. 226: p. 12-21 [PMID:29689430]