PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100151020011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 76aa    MW: 8500.83 Da    PI: 9.5489
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100151020011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-05225123
                                  EEETTTT.EEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCg.ksFsrksnLkrHirtH 23
                                  y+C+ C+ k Fs  s+L++H + +
  Ote100151020011|100151020011  2 YVCKRCNrKQFSVLSDLRTHEKHC 25
                                  9*******************9876 PP
2zf-C2H213.20.000273348520
                                  TTTEEESSHHHHHHHH CS
                       zf-C2H2  5 dCgksFsrksnLkrHi 20
                                   Cg++Fsrk+ L+ H 
  Ote100151020011|100151020011 33 SCGTTFSRKDKLMGHV 48
                                  5************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.1E-42448IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MYVCKRCNRK QFSVLSDLRT HEKHCGDQKW QCSCGTTFSR KDKLMGHVAL FVGHAPAANC  60
LIKTGGNGSV VMENNR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028052411.14e-36protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
RefseqXP_028101965.14e-36protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
SwissprotQ0WT242e-27STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A2R6P7E64e-35A0A2R6P7E6_ACTCH; Protein SENSITIVE TO PROTON RHIZOTOXICITY like
STRINGMigut.N02542.1.p2e-35(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112652225