PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100151890071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 250aa    MW: 26885.7 Da    PI: 9.0876
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100151890071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016224247123
                                   EEETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                   ++C+ C+k+F++   +++H +  H
  Ote100151890071|100151890071 224 HSCKSCNKTFNSENAMQSHAKAkH 247
                                   79*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.34E-5219246No hitNo description
PfamPF121713.3E-5223242IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0064224247IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.261224250IPR007087Zinc finger, C2H2
PROSITE patternPS000280226247IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MQTLALALSA VYAYKIPLSR LASFQLFSKN RACETPPASF ALTNNIFNGN GVLGIYFIGY  60
IADDNATEGE EFSSDDDEFE NELLEAQGNG LSKANNGILK PVAAKEGAKN KAKKEEEPDS  120
XXXXXXXXXX XXXXXXXXIP EIDSSDVSED DSXXXXXXXX XXXSPKVQQS KKRPAGSAGR  180
TPVPKKTKSA TPEKSGKKGQ NATPAPSKSA GKTKEQTPKS GGQHSCKSCN KTFNSENAMQ  240
SHAKAKHGGK