PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100152920231

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

G2-like

Protein Properties

Length: 380aa MW: 43154.8 Da PI: 9.7874

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100152920231	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.7	2e-31	86	139	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+a+e+LGG+e+AtPk++l+lm+v gL+++hvkSHLQ+YR+ Ote100152920231\|100152920231 86 PRLRWTPDLHLSFVHAIERLGGQERATPKAVLQLMNVRGLSISHVKSHLQMYRS 139 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.409	82	142	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-29	82	140	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.67E-14	84	140	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-23	86	141	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-8	87	138	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MEDIVSGEEI INGGQADNTV TSSSDRSSID LNEDAGSNEV GDPMNEVSSI SIQRRDEKSG 60 ESSKQSDEEK EKNKNAVRQY VRSKMPRLRW TPDLHLSFVH AIERLGGQER ATPKAVLQLM 120 NVRGLSISHV KSHLQMYRSK KLDESGRVIG GSNRVYIQGR GYVYDKCSSP FHELRIENGG 180 IVFARNSNLQ QDCSIPFPQT LKYHQPYFKN LSSRYHPWFS SYRHEPKVRL DSQLMSDAGK 240 DRFSGGPSRP AQFLEGRRWP PIHSQFKEKD VSKSNSIWSS TLSQNNFKPL INLEKPSRLQ 300 MNEERKFNRK DWFPVNLKLN LSLGLNDIND QKACSNDGDR SGINTKLSLA LAPHSSSTAT 360 XXXXXXXXXX XXXXPLSLFF

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MEDIVSGEEI INGGQADNTV TSSSDRSSID LNEDAGSNEV GDPMNEVSSI SIQRRDEKSG  60
ESSKQSDEEK EKNKNAVRQY VRSKMPRLRW TPDLHLSFVH AIERLGGQER ATPKAVLQLM  120
NVRGLSISHV KSHLQMYRSK KLDESGRVIG GSNRVYIQGR GYVYDKCSSP FHELRIENGG  180
IVFARNSNLQ QDCSIPFPQT LKYHQPYFKN LSSRYHPWFS SYRHEPKVRL DSQLMSDAGK  240
DRFSGGPSRP AQFLEGRRWP PIHSQFKEKD VSKSNSIWSS TLSQNNFKPL INLEKPSRLQ  300
MNEERKFNRK DWFPVNLKLN LSLGLNDIND QKACSNDGDR SGINTKLSLA LAPHSSSTAT  360
XXXXXXXXXX XXXXPLSLFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-18	87	141	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	87	141	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	87	141	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	87	141	3	57	Protein PHOSPHATE STARVATION RESPONSE 1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011101395.1	1e-120	myb-related protein 2
Refseq	XP_020546992.1	1e-120	myb-related protein 2
TrEMBL	A0A4D9ARE9	1e-122	A0A4D9ARE9_SALSN; Uncharacterized protein
TrEMBL	A0A4D9B0P7	1e-122	A0A4D9B0P7_SALSN; Uncharacterized protein
STRING	Migut.M01030.1.p	2e-64	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5516	23	34