PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100153320031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 301aa    MW: 34118.2 Da    PI: 4.9097
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100153320031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.30.00064127150842
                                   HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHH CS
                           HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKae 42 
                                    ErrRR r+++++  Lr+l+ ka           +
  Ote100153320031|100153320031 127 SERRRRGRMKEKLYALRSLMDKA-----------S 150
                                   6*****************98665...........4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.0E-8117184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-10117177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.02E-8117165No hitNo description
SMARTSM003533.9E-5125168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MERYEELPFH QYYATDFGLI DFMDEANFDH FGENNLTLDQ PIFNSCNLGY DFCNNDAAVV  60
ANDAPHFVPP PAELFDFDHI ADRYELGLLS ACHDEAAEED EEDESSGSGA AATPRPKKTD  120
RARTLVSERR RRGRMKEKLY ALRSLMDKAS IVGDAVLYVQ DLQMQAKKLR AEIAGLESGE  180
EKYQHKITQS NASLTCFYPI TKKIFKMDVS EVEERGFYVR IVSNKGKGVA MLLYRALESL  240
TSFNVRTSNL AASSDYNYVF TFTLHTMDGR MDVNLQSVKV WIASVFLHHG FEFQTSQSAA  300
T
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089193.13e-93transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A0H3YB441e-117A0A0H3YB44_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.D02290.1.p5e-86(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37822340